Joyce, M., Falconio, F.A., Blackhurst, L. et al. Divergent evolution of sleep in Drosophila species. Nat Commun 15, 5091 (2024). https://doi.org/10.1038/s41467-024-49501-9

Elephants spend up to 18 hours a day eating grass, bushes, roots, shrubs to maintain their appropriate calorie intake. They sleep only 1 or 2 hours a day. Bats, on the other hand, are believed to sleep more than 20 hours a day. Finally, Great Frigatebird. They would normally sleep 9-10 hours a day and you would have hard time trying to get them to sleep less than that. Unless it’s migratory season. In that case, they sleep 40 minutes a day, while they flies for days and days in a row. Evolution is one of the great mysteries of sleep. Why do some animals require 20 hours, while others can cope with 1 or 2? Whatever sleep function is, how can it be accomplished in 10 hours in one season and 40 minutes in another, as it happens in migratory birds?

We won’t really understand what sleep is and what it does if we keep thinking about it in an anthropocentric way. We need to look at it from the evolutionary standpoint and only then we will be able to grasp what its role in nature is. This work marks our first big attempt in this direction. We did not compare sleep between elephants and bats. Too tricky to keep in the test tube and too evolutionary distant. Instead, we used seven species of Drosophila spanning an evolutionary distance of 5-50 Million years and with different ancestral origins and adaptation niches.

In all of them, we measure sleep using a computerised video tracking system based on Raspberry PIs which can be linked to robots to deliver sensory stimuli in real-time, such as puffs of air or automatic rotations of the test tube to keep them awake. We had actually used this device before to explore how fruitflies recognise and respond to salient stimuli during sleep. Here, we combined those with the excellent hidden Markov chain model initially proposed by the Griffith Lab at Brandeis and were able to confirm that different sleep stages as detected by the Markov chain do indeed coincide with different arousabilities. Deep sleeping flies are harder to wake up!

We found that all species sleep in more or less the same way, although for very different lengths of time. In almost all species, sleep is sexually dimorphic: females sleep only at night and males sleep in the afternoon too. Except for D. virilis: a cosmopolitan species believed to have arisen in the Miocene in the deserts of Afghanistan. Interestingly, this is something very recently found in other desert species too. You probably don’t want to be flying around in a desertic afternoon! So, sleep amount is generally conserved and obviously it adapts to species-specific ecological conditions, exactly as for the elephant and the bat. But what about sleep homeostasis? How do these exotic flies react when we try to keep them awake? For this, we turned to our trusty robots and kept flies awake for 24 hours in a row by rotating their little world around every time the fell asleep. A bit like in the Inception movie. Watch the first tube from the left to see the robot in action.

When you deprive an animal of sleep, it tries to recover some of it ASAP. This is a hallmark of sleep homeostasis and what we observed in D. melanogaster, but not in any of the other species! Like the migratory birds, they suddenly seemed OK not sleeping. No signs of tiredness. And even making our robot work for 7 days in a row – 168 hours – did nothing to them! These other species could stay awake just fine and showed no signs of tiredness. Except for melanogaster, which showed a steady increase in sleep pressure. However, at least some species were able to show rebound sleep when we used a different way of keeping them awake: social stress induced by male-male interaction in a laboratory boxing-ring equivalent. Stress can induce rebound sleep in many species, including rodents, and it does so by activating specific brain circuits as our colleagues recently showed.

Surprisingly, male-male interaction did lead to sleep rebound not just in melanogaster but also, simulans, sechelia, yakuba. Still no signs of homeostasis in the remaining three species though! What decides whether an animal will show homestasis? It seems the answer is in their brains. We found that, in general, sleep rebound correlated with an increase in synaptic strength. All the flies that showed rebound also showed a larger amount of a specific synaptic protein. And conversely, when we remove synaptic proteins from specific parts of the brain involved in learning and memory in D. melanogaster we get a similar effect: no tiredness after sleep deprivation.

We also go on and look at the evolution of pharmacology in these species and much more. Have a go at the manuscript yourself. It’s hopefully easy to read for everyone. hat is the take-home message? Well, we try to figure out what all this means in evolutionary terms. We think sleep has different functions in different species (doh!) and some functions therefore evolved for some species but not others. The one common thing all animals have in common is they all sit on the same planet which has been rotating at the same speed for a very long time. We believe this adaptation created sleep in the first place giving animals a chance to optimise their activities to days & nights. Then, other sleep functions kicked in. Some animals need sleep to cope with stress; some others need sleep to learn better; to memorize; to fight bacteria. Who knows how many different functions there are? Some need sleep for multiple reasons at once. This makes sense on multiple levels and can ultimately explain why elephants can do in 1 hour what bats seem to take 20 hours for!

	Ethoscope db files for all the behavioural data in the work (FTP)
	Jupyter notebooks and metadata for all the figures in the paper (link)
	BRP quantification in Fig. 2 – Images and quantification scripts (link)
	Paper on Nature Communications (link)(pdf)
	Twittorial describing the findings (link)

One of the most puzzling aspects of sleep is that it cannot happen without depriving us of our full conscious experience. Whatever the function of sleep is, it cannot be achieved without disconnecting our brains from the external world. A full conscious state and sleep are not compatible, it seems, to the point that one of the definitions of consciousness is that “it is all that fades away when we are in dreamless sleep”.

The fact that the brain has to surrender to the tyranny of sleep is also the main reason why scientists believe (in a rather dogmatic fashion) that sleep is “of the brain, by the brain for the brain“. Yet, even during sleep parts of our brains retain some ability to process external information. In the 1960s, Oswald et al formally showed that sleeping humans could wake up in response to some salient stimuli, such as their names being called, but not in response to stimuli of identical strength but no salience, such as other people’s names or their names played in reverse.

This finding has been confirmed and extended over the decades in the scientific literature, providing evidence that it applies to even more complex nuances of saliency, such as an angry tone of voice. The videos below suggest that scientific literature is certainly less comprehensive and (less amusing) than the phenomenon in its entirety.

Even though we have numerous scientific and anecdotal evidence that animals and humans can wake up to salient sensory stimuli during sleep, hardly anything is known about the biological underpinning of this phenomenon. And here: enter Drosophila melanogaster! What better animal model than flies to dissect this amazing brain property?

In a paper titled “Sensory processing during sleep in Drosophila melanogaster” published in Nature, we introduce flies as the ideal animal model to dive into the biology of how a brain can simultaneously be asleep and respond to external stimuli.

Postdoc Alice French took the lead on this amazing project to show that even flies can recognise salient stimuli in their sleep and react accordingly, modulating their response based on their internal state. We initially expanded the robotic platform we had previously built in the lab, called ethoscopes, which allows us to monitor and interfere with flies using inexpensive @Raspberry_Pi computers. Alice wanted to build a robotic component able to challenge single flies with specific odour but only while they were asleep, to record whether they would wake up or not. She obviously started with…. LEGO!

In our first prototype, we built a robot able to operate a LEGO valve so to send a puff of air to the sleeping fly. LEGO valves were a good start because we needed 500 of them.

The system worked and we went from those early all-LEGO prototypes (left) to the final 3D printed product (right).

Using this ethoscope module we could challenge sleeping flies with different odours and check whether they would respond differently to some of them. We found they did! Flies would respond to 5% acetic acid for instance, but not to 10% acetic acid. Not only that, the valence of the odour could be modulated by internal states. Flies that had received a little starvation were increasing their response specifically to food-related odours. When we gave alcohol to flies, on the other hand, we found drunk Drosophilae were less responsive to odours in general showing somehow a deeper sleep state.

Now, flies are arguably the best animal model to study circuit neuroscience these days. We have a full connectome of the fly brain and countless genetic tools that allow us to turn neurons on and off. So that is what we did. We started turning neurons on and off in the fly brain, looking for some that would modulate their ability to sense stimuli during sleep. We found them!

We actually found the whole circuit, connecting the “fly nose” all the way to the sleep centers in the brain. And when we used thermogenetics to switch those neurons on or off with infrared radiation, we could interfere with that process and make the flies more or less responsive.

In short, we have shown that flies can recognise and respond to odours during sleep, waking up only to those that they consider salient. We also show that this phenomenon is plastic and modulated by internal states, with animals being more likely to wake to food odours after a little starvation. We also described a blueprint for a neuronal circuit that connects the peripheral olfactory receptor neurons all the way to known sleep-regulating centres in the fly brain. We explore three prototypical gate-points that modulate subconscious processing of olfactory information during sleep: two at the periphery and one in the central brain.

The story is important and of general interest for at least three reasons:

1. for the groundbreaking implications it has on the consciousness field, introducing flies as a model to study
   subconscious processing of information, and providing an experimental paradigm that allows to empirically face some key questions of the field;
2. for the implications it has on the sleep community, describing the neuronal circuit regulating sensory processing during sleep, a neuronal feature that is poorly understood in any other animal model. Our description of the circuit regulating sensory processing during sleep is the most accurate to date and the work also potential future medical significance, for instance in the study of altered states of consciousness, such as coma;
3. for the implications it has on the larger neuroscience community, describing how a circuit modulates the processing of sensory information to distinguish valence.

Drosophila has been employed to study arousal threshold many times before. There are many studies in which flies can be used to gauge sleep “depth” by using quantitative mechanical stimuli, such as simple vibration or touch. Our study is the first one to study a more puzzling property: how do we recognise qualitative stimuli during sleep? How do we recognise our own name while unconscious?

The video abstract below provides more information on the contents and the implications of the work.

The full reference to the paper is:

• French AS, Geissmann Q, Beckwith EJ, and Gilestro GF*
  Sensory processing during sleep in Drosophila Melanogaster
  Nature 2021 Sep 29; 597(5)

The work was supported by BBSRC and H2020-Marie Curie funding. The lead author of the study is Dr. Alice French.

Nature has featured the paper with a dedicated News & Views by Wahne Li and Alex Keene.

Imperial wrote a little PR piece.

Why we sleep remains an unresolved mystery of biology. Why do humans have to spend one-third of their lifetime in a status of profound unconsciousness which leaves them vulnerable and endangered? What do we gain from it? We still do not possess an answer to this question but we assume that it must be something tremendously important, also considered that sleep appears to be a necessity not just in humans but in all animals – including fruit flies. A particularly intriguing evolutionary conserved feature of sleep is what we call “sleep homeostasis”, that is: the innate modulation of sleep pressure based on previous sleep amount. If we have a good long nap, we may have a harder time falling asleep at night; conversely, if we pull an all-nighter partying on Sunday night, we are going to have a hard time at the office on the following morning. That is sleep homeostasis.

Is sleep homeostasis an unmodifiable, sovereign need in the animal or can it somehow be suppressed? Previous studies showed that migratory birds may be able to resist the temptation to sleep while flying above the ocean. Similarly, male pectoral sandpipers, a type of Arctic bird, can forego sleep in favour of courtship during the three weeks time window of female fertility. Could we find a similar behaviour in a genetically amenable animal model, like fruit flies?

In a “blind date” experiment, we forced interaction in a restricted space between socially naive, young, male fruit flies and receptive females. The interaction between the two led to an uninterrupted passionate courtship lasting the entire 24 hour period (and to one – and, in some cases, more – events of copulations). Surprisingly, not only did male flies forego sleep when prompted with a receptive female counterpart, but they also suppressed their natural sleep homeostasis and never recovered from the sleep lost courting. In the second set of experiments, we forcefully kept flies awake by employing robots that would automatically disturb the flies whenever they would fall asleep. At the end of the sleep deprivation treatment, flies would normally recover the lost sleep by having an extra nap. However, raising the sexual arousal of male flies by simply exposing them to the female pheromone, abolished their homeostatic need.

Ours is a study on the fundamental biological underpinnings of sleep. Our goal is to show that sleep is not a disconnected, uncontrollable phenomenon but a biological drive that can, in some conditions, be overcome. The study is particularly directed at other researchers and provides an important caveat not to be forgotten when conducting sleep experiments: it is possible to create an internal state in the animal that will heavily affect sleep regulation, without interfering with sleep regulatory circuits. A researcher may be artificially activating neurons that make an animal stressed, anxious, angered, or in love and all of these neurons will ultimately have an effect on sleep. Yet, they shall not be classified directly as “sleep neurons” or we will end up with a false map of where sleep neurons really are.

eLife 2017 Sep 12;6;e27445
Regulation of sleep homeostasis by sexual arousal
Esteban J. Beckwith, Quentin Geissmann, Alice S. French, and Giorgio F. Gilestro

Online published paper

Supplementary Material

Interactive supplementary videos
Supplementary movies as raw dataset

Featured in:

eLife insight: Sleep: To rebound or not to rebound — Stahl BA, Keene AC